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Boutique hotel vacation rentals in San Juan County

Find and book unique boutique hotel rentals on Airbnb

Top-rated boutique hotel rentals in San Juan County

Guests agree: these boutique hotel rentals are highly rated for location, cleanliness, and more.

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Guest favorite
A bright bedroom is shown, featuring a spacious bed with soft white linens. Large windows offer views of the surrounding greenery and water. A wooden deck is visible outside, enhancing the connection to nature.
Hotel room in Friday Harbor
5 out of 5 average rating, 77 reviews

Private guesthouse w/ hot tub & breathtaking views

Your private guesthouse awaits at ~ Inn at Saltwater Farm ~ a modern, Scandinavian-style, boutique inn situated on 162 wild and beautiful acres just outside the town of Friday Harbor. Escape to your separate and private guesthouse with breathtaking views, modern amenities, and miles of trails, gardens, and natural beauty to explore. Cedar hot tub in the deck overlooking the Salish Sea, outdoor shower, and pet friendly for friendly pets! KING bedroom + QUEEN loft + DOUBLE sleeper sofa + bthrm.

Guest favorite
A modern guesthouse features a sloped roof and wooden exterior, set against a backdrop of tall evergreen trees. Large glass doors provide a view into the interior, blending harmoniously with the natural surroundings.
Hotel room in Friday Harbor
4.98 out of 5 average rating, 105 reviews

Private guesthouse immersed in nature

Your private guesthouse awaits at ~ Inn at Saltwater Farm ~ a modern, Scandinavian-style, boutique inn situated on 162 wild and beautiful acres just outside the town of Friday Harbor. Escape to your separate and private guesthouse with breathtaking views, modern amenities, and miles of trails, gardens, and natural beauty to explore. Private deck & floor-to-ceiling windows with a cozy & intimate woodsy view. Wheelchair accessible. KING bedroom + QUEEN loft + DOUBLE sleeper sofa + bathroom.

Guest favorite
A modern guesthouse with a triangular roof is nestled among tall evergreen trees. The exterior showcases a contrasting black and warm wood facade, with large windows framed by nature. Surrounding wild grasses and shrubs create a serene, secluded atmosphere.
Hotel room in Friday Harbor
4.98 out of 5 average rating, 57 reviews

Private guesthouse surrounded by majestic firs

Your private guesthouse awaits at ~ Inn at Saltwater Farm ~ a modern, Scandinavian-style, boutique inn situated on 162 wild and beautiful acres just outside the town of Friday Harbor. Escape to your separate and private guesthouse with breathtaking views, modern amenities, and miles of trails, gardens, and natural beauty to explore. Light & bright, private deck, floor-to-ceiling windows & an intimate woodsy view. KING bedroom + QUEEN loft + DOUBLE sleeper sofa + bathroom.

A cozy room features a wooden bunk bed with comfortable mattresses and a chair positioned by a large window. Natural light brightens the space, showcasing the earthy tones of the furnishings and the inviting view of greenery outside.
Hotel room in Friday Harbor
4.51 out of 5 average rating, 119 reviews

Wayfarers Guest House. Private, driftwood bunks #3

Thank you for finding the Wayfarers Rest, providing comfortable and convenient lodging for active travelers since 1999. Room 3 is a private room that can sleep up to 3, all linens provided. The common areas you will share with other guests (fully equipped kitchen, dining, living room and bathrooms) Wayfarers Rest is located just 4 blocks from the ferry terminal and two blocks from main St., easy walking. Free Wi-Fi, parking & chicken eggs. Pet friendly

Guest favorite
A well-appointed guest room is presented with a king sleigh bed positioned against a dark blue accent wall. Soft bedding complements the tranquil decor. A nightstand is included, along with a coffee station, enhancing the convenience for guests.
Hotel room in Lopez Island
4.88 out of 5 average rating, 51 reviews

~VintageLuxury~ SoakingTub Fireplace King Bed WiFi

✔ No Cleaning Fees ✔ Super Fast WIFI ✔ Fireplace ✔ Full Bathroom w. Soaking Tub ✔ In Room Coffee + Decaf & Tea ✔ Leather couch + King Sleigh Bed ✔ Access to All Common Spaces at Edenwild Boutique Hotel ✔ 24/7 Staff that are here when you need them and never when you don't :) ✔ TV Free Property- Bring your Tablet for Movies ✔ Free Parking Our commitment to you has made us TripAdvisors #1 Hotel in the San Juan Islands.

A modern barn structure is set against a vibrant sunset sky, featuring a blend of warm colors. Surrounding grassland is lush and green, dotted with trees in the background, creating a serene atmosphere. A small fire pit with seating is positioned nearby.
Hotel room in Friday Harbor
5 out of 5 average rating, 3 reviews

Unique private suite w/ forest & meadow views

Your unique 700+ sqft suite awaits at ~ at Saltwater Farm ~ a modern, Scandinavian farm-style abode, situated on 162 wild and beautiful acres just outside the town of Friday Harbor. Escape to your large private suite above our stunning new barn with kitchen, modern amenities, DSL WiFi internet, and miles of trails, gardens, and natural beauty to explore. KING bedroom + 2 DOUBLE sleeper sofa loft + TWIN bedroom + bathroom

Guest favorite
A spacious room features a queen bed with light-colored bedding against a rich blue accent wall. A comfortable queen sleeper sofa sits opposite, complemented by a wooden coffee table and decorative rug. Large windows with closed curtains allow for natural light.
Hotel room in Lopez Island
4.86 out of 5 average rating, 35 reviews

•Walk to Everything• Wi-Fi •Island Hotel•

Your Suite awaits at ~The Edenwild Boutique Inn~ Island Vintage meets modern amenities. Think friendly, not stuffy with exceptional service. QUEEN Bed + Queen Sleeper Sofa. Bathroom with standup shower, plush towels and premium bath products. DIFFERENT than other AirBnBs where you feel like your crashing. We think of every aspect of your stay and our staff is always there when you need us and never when you don’t.

Top guest favorite
A vibrant sleeping area is highlighted by a spacious bed adorned with a colorful patterned blanket. The walls are painted in a deep hue, accented by wooden paneling. A cozy chair, a bedside lamp, and framed artwork complement the inviting atmosphere.
Hotel room in Friday Harbor
4.98 out of 5 average rating, 48 reviews

Cedar & Mandala two bedroom suite at Juniper Lane

Juniper Lane Guest House, a hip and unique boutique Inn on San Juan Island. This unique Friday Harbor accommodations is a custom crafted bold mosaic of exotic woods, tile, art, and color. Nestled on the edge of Friday Harbor overlooking Beaverton Valley it has a rural feel yet is still close to town. This Boutique Inn offers a variety of accommodations that are “brilliant and affordable” for everyone.

Guest favorite
A cozy room features vibrant green walls and wood paneling, creating a warm atmosphere. A spacious bed is adorned with a patterned blanket, while a seating area with cushions invites relaxation. Natural light enters through multiple windows, enhancing the inviting space.
Hotel room in Friday Harbor
4.97 out of 5 average rating, 69 reviews

Green Tea room at Juniper Lane

Juniper Lane Guest House, a hip and unique boutique Inn on San Juan Island. This unique Friday Harbor accommodations is a custom crafted bold mosaic of exotic woods, tile, art, and color. Nestled on the edge of Friday Harbor overlooking Beaverton Valley it has a rural feel yet is still close to town. This Boutique Inn offers a variety of accommodations that are “brilliant and affordable” for everyone.

Guest favorite
A serene beach scene is captured under a clear blue sky. Two figures stroll along the shoreline, with gentle waves lapping at the sandy beach. Sunlight filters through nearby trees, casting a soft glow on the landscape. The atmosphere reflects tranquility and natural beauty.
Hotel room in Lopez Island
4.93 out of 5 average rating, 45 reviews

Romantic Island Hotel with Breathtaking Sunsets

✔ Super Fast WIFI ✔ In Room Coffee + Decaf & Tea ✔ Full Bathroom ✔ Private Covered Porch ✔ Access to All Common Spaces at Edenwild Boutique Hotel ✔ 24/7 that are here when you need them and never when you don't :) ✔ Walk to shops, restaurants, and beaches. The Edenwild is a 10 room Boutique Hotel that is Elegant as well as friendly. Your privacy and comfort is our top priority.

Superhost
A spacious bedroom features a wooden four-poster bed with neutral bedding, complemented by a cozy gray sofa. Soft lighting illuminates the walls, which are painted in a calming blue shade. A framed artwork hangs above the bed, adding a touch of color.
Hotel room in Lopez Island
4.91 out of 5 average rating, 107 reviews

•Sweet Island Hotel• Fireplace, Soaking Tub, WIFI

✔ Super Fast WIFI ✔ Fireplace ✔ In Room Coffee + Decaf & Tea ✔ Full Bathroom w. Soaking Tub ✔ 24/7 Staff That There When You Need Them and Never When You Don't :) ✔ Access to All Common Spaces at Edenwild Boutique Hotel ✔ Onsite Bicycle and Kayak rentals We think of every aspect of your stay, and our staff is always there when you need us and never when you don’t.

Guest favorite
A charming Victorian inn is showcased at twilight, featuring a sprawling front porch lined with warm lights. A brick pathway is adorned with blooming white flowers, leading to the welcoming entrance surrounded by lush greenery.
Hotel room in Lopez Island
4.88 out of 5 average rating, 32 reviews

•BoutiqueHotel• KingSuite •Waterviews • Fireplace•

Experience the best of both worlds—hotel amenities with the privacy of an Airbnb. This charming Victorian inn offers you an in-suite fireplace, vintage clawfoot tub, and easy access to nearby cafes and restaurants, all while giving you the space to unwind in total privacy. Escape the everyday and reconnect in a quiet seaside village, overlooking the bay.

Popular amenities for San Juan County boutique hotel rentals

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